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Generate a 3 tab format using a list of pubmed identifiers, a pdf or a free text file.
Create dataset
Biocuration tools
File labelling allows you to classify documents.
File labelling
Identify entities within documents.
Entity tagging
Link entities within documents with database or ontology identifiers.
Entity linking
Compare, combine and create "Gold standard" datasets from various curators.
Compare files
MyMiner repository
View publically available Corpora.
Get corpora
Make your corpora available to everyone and contribute in to train better textmining systems.
Submit your corpus
Tutorials & Feedback
Learn how to use MyMiner tools.
Tutorial
Provide us your suggestions or comments.
Feedback
Get involved, find/suggestions and help. MyMiner Google Group
MyMiner Mailling list
Links
Links to other annotation tools.
Annotation tools
Some links to textmining or bicuration intiatives.
Links
NLP tools and repositories
Some links of interest.
NLP and BioNLP tools.
Here we provide links to Natural language processing (NLP) application repositories
NLP by Wikipedia.
Visit this URl :
http://en.wikipedia.org/wiki/Natural_language_processing
Tools, provided by the European Network of Excellence in Human Language Technologies "Elsnet"
More details here :
http://www.elsnet.org/toolslist.html
Software Tools for NLP, some of them are not available.
http://www-a2k.is.tokushima-u.ac.jp/member/kita/NLP/nlp_tools.html
NLP from the OpenNLP organization.
OpenNLP is an organizational center for open source projects related to natural language processing.
Details here :
http://opennlp.sourceforge.net/links.html
NLP tools from the The Stanford NLP Group
http://nlp.stanford.edu/links/statnlp.html
Natural Language Processing research at Columbia University.
http://www1.cs.columbia.edu/nlp/tools.cgi
BioNLP resources done by Martin Krallinger at the CNIO.
http://zope.bioinfo.cnio.es/bionlp_tools/get_all_bionlp_tools_out?SUBMIT=Submit+Query
Biocreative bionlp tools repository.
http://biocreative.sourceforge.net/bionlp_tools_links.html
And of course have a look on the Biocreative initiative :
http://www.biocreative.org
